New experiences for presenting, accessing, and reading digital scientific articles on the web
Keywords:
Scientific electronic journal, Web 2.0, Semantic Web, Semantic publicationsAbstract
Although scientific electronic journals are recognized as a medium for scholarly publication in the digital environment, they are still based on the printed pattern. The textual format of articles in natural language prevents the semantic processing of that content by computer programs. The semantics and expressive power of search strategies for retrieving content in modern online bibliographic systems of digital libraries, repositories, and databases are still limited. Objectives: to identify and analyze experiences that involve Semantic Web technologies and Web 2.0 to provide direct access to the semantic content of digital scientific articles and expand the interaction between authors and readers on the Web. Methodology: approach (qualitative), type of research (descriptive, exploratory), techniques used (bibliographic and D.M. AMBINDER & C.H. MARCONDES 196 TransInformação, Campinas, 25(3):195-201, set./dez., 2013 documentary research). Results: Semantic Web technologies represent an advance towards the semantic retrieval and processing in the digital environment; software agents that run “inferences” and more sophisticated tasks go beyond conventional digital publication, surpassing the previously used traditional textual and linear reading format, search engines, and browsing. The effective use of Web 2.0 technologies acilitates the relationship and the activities developed by the researcher in the digital environment. Metrics based on these activities can inform measures of faster impact and complement traditional citation metrics, outlining a new scenario for Scientometrics. onclusion: (10) experiments are applied to the Biomedical area.
Downloads
References
ATTWOOD, T.K. et al. Calling international rescue: knowledge lost in literature and data landslide! Biochemical Journal, v.424, n.3, p.317-333, 2009.
BERNERS-LEE, T.; HENDLER, J.; LASSILA, O. The semantic web: a new form of web content that meaningful. Scientific American, v.284, n.5, p.34-43, 2001. Available from: <http://wwwscientificamerican.com/ 2001/0501issue/ 0501 berners-lee.htm>. Cited: Nov. 24, 2010.
BLATTMANN, U.; SILVA, F.C.C. Colaboração e interação na web 2.0 e biblioteca 2.0. Revista ACB, v.12, n.2, p.191-215, 2007.
BREITMAN, K.K. Web semântica: a internet do futuro. Rio de Janeiro: LTC, 2005.
CAMPOS, M.L.A. O documento e as ferramentas de tratamento e recuperação de informações na web semântica: um novo espaço de identidade. In: FREITAS, L.S.; MARCONDES, C.H.;
RODRIGUES, A.C. (Org.). Documento gênese e contextos de uso: estudos da informação. Niterói: Eduff, 2010. p.223-234.
COSTA, L.C. Uma proposta de processo de submissão de artigos científicos às publicações eletrônicas semânticas em ciências biomédicas. 2010. Tese (Doutorado em Ciência da Informação) - Universidade Federal Fluminense, Niterói, 2010.
DE WAARD, A. From proteins to fairytales: directions in semantic publishing. IEEE Intelligent Systems, v.25, n.2, p.83-88, 2010.
DE WAARD, A. et al. Hypotheses, evidence and relationships: the HypER approach for representing scientific knowledge claims. In: INTERNATIONAL SEMANTIC WEB CONFERENCE, WORKSHOP ON SEMANTIC WEB APPLICATIONS IN SCIENTIFIC DISCURSE, 8., 2009, Washington, DC. Proceedings… Washington, DC: Springer Verlag Berlin, 2009. Available from: <http://www.w3.org/wiki/images/a/ae/HCLS$$ ISWC 2009$$ Workshop deWaardpdf>. Cited: May 29, 2011.
DINAKARPADIAN, D. et al. MachineProse: an ontological framework for scientific assertions. Journal of the American Medical Informatics Association, v.13, n.2, p.220-232, 2006.
DZIEKANIAK, G.V.; KIRINUS, J.B. Web semântica. Encontros Bibli: Revista Eletrônica de Biblioteconomia e Ciência da Informação, n.18, p.20-39, 2004. Disponível em: <https://periodicos.ufsc.br/index.php/eb>.
GAO, Y. et al. SWAM: a distributed knowledge infrastructure for Alzeimer disease research. Journal of Web Semantic, v.4, n.3, 2006. Available from: <http://www.websemanticsjournal.org/ps/pub/2006-17>. Cited: Dec.12, 2010.
GARDIN, J.V. Vers un remodelage des publication savants: ses rapports avec science de l’informatio. In: CHAUDRION, F. (Ed.). Filtrage et résumé automatique de l’nformation sur les reseaux: actes du 3ème Colloque du Chapitre Français de l’
ISKO, 2001. Disponible en: <http://www.isko.org/events.html>. Accès: Dez. 10, 2011.
JARDIM, A.D. Ferramentas e aplicações para a web semântica. Pelotas: Universidade Católica de Pelotas, 2007. Disponível em: . Acesso em: 29 dez. 2011.
MARCONDES, C.H. Um modelo semântico de publicações eletrônicas. Liinc em Revista, v.7, n.1, p.82-103, 2011. Disponível em: <http://www.ibict.br/liinc>. Acesso em: 5 maio 2011.
MULLER, H.M.; KENNY, E.; STERNBERG, P.W. Textpresso: an ontology-based information retrieval and extraction system for biological literature. Plos Biology, v.2, n.11, 2004. Available from: <http://www.plosbiology.org/article/info:doi/10.1371/
journal.pbio.0020309>. Cited: Mar. 9, 2012.
MURRAY-RUST, P. et al. CML: chemical markup language. Chicago: [s.n.], 1995. Available from: <http://www.ch.ic.ac.uk/rzepa/cml/>. Cited: Mar. 9, 2012.
MURRAY-RUST, P.; RZEPA, H.S. STMML: a markup language for scientific, technical and medical publishing. Data Science Journal, v.1, n.2, p.128-193, 2002. Available from: <http://journals.eecs.qub.ac.uk/codata/journal/contents/1_2/1_2pdfs/ds121.pdf>. Cited: May 11, 2011.
PALAZZI, D.C. QDAontology: abordagem para o desenvolvimento de ontologias. Dissertação (Mestrado em Computação) - Universidade Federal de Juiz de Fora, Juiz de Fora, 2010. Disponível em: <http://www.ufjf.br/mmc/files/2010/06/dissertacao_daniele_palazzi.pdf>. Acesso em: 12 fev. 2010.
PRIEM, J.; PIWOWAR, H.A.; HEMMINGER, B.M. Altmetrics in the wild: using social media to explore scholarly impact. 2012. Available from: <http://arxiv.org/abs/1203.4745>. Cited: Mar. 30, 2012.
PRIMO, A. O aspecto relacional das interações na web 2.0. In: ANTOUN, H. Web 2.0: participação e vigilância na era da comunicação distribuída. Rio de Janeiro: Mauad, 2008. p.101-122.
RACUNAS, S.A. et al. HyBrow: a prototype system for computer-aided hypothesis evaluation. Bioinformatics, v.20, n.1, p.257-264, 2004.
RAMALHO, R.A.S. Desenvolvimento e utilização de ontologias em bibliotecas digitais: uma proposta de aplicação. 2010. Tese (Doutorado em Ciência da Informação) - Faculdade de Filosofia e Ciências, Universidade Estadual Paulista, Marília, 2010.
RENEAR, A.H.; PALMER, C.L. Strategic reading, ontologies, and the future of scientific publishing. Science, v.325, n.14, p.828-832, 2009.
SCIENTIFIC PUBLISHING TASK FORCE. HCLS/ScientificPublishing TaskForce. 2006. Available from: <http://www.w3.org/wiki/HCLS/ScientificPublishingTaskForce>. Cited: Mar. 30, 2012.
SHOTTON, D. et al. Adventures in semantic publishing: exemplar semantic enhan- cements of a research article. Plos Computational Biology, v.5, n.4, 2009. Available from: <http://www.ploscompbiol .org/ar t icle/ info: doi /10.1371/journal.pcbi.1000361>. Cited: Dec. 8, 2010.
SOLDATOVA, L.D.; KING, R.D. An ontology of scientific experiments. Journal of the Royal Society Interface, v.3, n.11, p.795-803, 2006. Available from:
royalsociety.org/content/u552845783800t73/fulltext.pdf>. Cited: Dec. 5, 2010.
TEXPRESSO. Textpresso sites. [2012]. Available from: <http://www.textpresso.org>. Cited: Mar. 30, 2012.
TOUTAIN, L.M.B.B. Biblioteca digital: definição de termos. In: MARCONDES, C.H. et al. (Org.). Bibliotecas digitais: saberes e práticas. Salvador: UFBA, 2006. p.15-24.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2022 Transinformação
This work is licensed under a Creative Commons Attribution 4.0 International License.
